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Journal articles
Minimal standards for the description of new genera and species of rhizobia and agrobacteria
Philippe M. Lajudie
1, 2, 3
Mitchell Andrews
Julie Ardley
Bertrand Eardly
Estelle Jumas-Bilak
4
Nemanja Kuzmanović
F. Lassalle
Kristina Lindström
Ridha Mhamdi
Esperanza Martínez-Romero
Lionel Moulin
Seyed Abdollah Mousavi
Xavier Nesme
5
Alvaro Peix
Joanna Pu\l Awska
Emma Steenkamp
Tomasz Stępkowski
Chang-Fu Tian
Pablo Vinuesa
Gehong Wei
Anne Willems
Jerri Zilli
Peter Young
Philippe M. De Lajudie 1, 2, 3
Author
Mitchell Andrews
Author
Julie Ardley
Author
Bertrand Eardly
Author
Ridha Mhamdi
Author
Esperanza Martínez-Romero
Author
Lionel Moulin
Author
Seyed Abdollah Mousavi
Author
1
UMR LSTM - Laboratoire des symbioses tropicales et méditerranéennes (TA A82/J - Campus international de Baillarguet 34398 Montpellier Cedex 5, France - France)
- Montpellier SupAgro - Institut national d’études supérieures agronomiques de Montpellier (2, place Viala 34060 Montpellier Cédex 2 - France)
- INRAE - Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (France)
- UM - Université de Montpellier (163 rue Auguste Broussonnet - 34090 Montpellier - France)
- Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement : UMR82 (Siège 42, rue Scheffer 75116 Paris - France)
- IRD - Institut de Recherche pour le Développement (Siège Le Sextant 44, bd de Dunkerque CS 90009 13572 Marseille cedex 02 - France)
2
IRD - Institut de Recherche pour le Développement (Siège
Le Sextant
44, bd de Dunkerque
CS 90009
13572 Marseille cedex 02 - France)
3
UM - Université de Montpellier (163 rue Auguste Broussonnet - 34090 Montpellier - France)
4
HSM - Hydrosciences Montpellier (Univ. Montpellier - Case MSE Place Eugène Bataillon 34095 MONTPELLIER CEDEX 5 - France)
- IRD - Institut de Recherche pour le Développement (Siège Le Sextant 44, bd de Dunkerque CS 90009 13572 Marseille cedex 02 - France)
- UM2 - Université Montpellier 2 - Sciences et Techniques (Place Eugène Bataillon - 34095 Montpellier cedex 5 - France)
- INSU - CNRS - Institut national des sciences de l'Univers : UMR5151 (INSU-CNRS 3 rue Michel-Ange, 75794 Paris Cedex 16 - France)
- UM - Université de Montpellier (163 rue Auguste Broussonnet - 34090 Montpellier - France)
- CNRS - Centre National de la Recherche Scientifique : UMR5151 (France)
5
LEM - Laboratoire d'Ecologie Microbienne - UMR 5557 (BAT GREGOR MENDEL (ex 741)-4 et 43 Bvd du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)
- INRA - Institut National de la Recherche Agronomique : UMR1418 (France)
- UCBL - Université Claude Bernard Lyon 1 (43, boulevard du 11 novembre 1918, 69622 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- ENVL - Ecole Nationale Vétérinaire de Lyon (France)
- VAS - VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (Université de Lyon, VetAgro Sup, 69280 Marcy l'Etoile (campus vétérinaire); Université de Clermont, VetAgro Sup, 63370 Lempdes (campus agronomique) - France)
- CNRS - Centre National de la Recherche Scientifique : UMR5557 (France)
Abstract : Herein the members of the Subcommittee on Taxonomy of Rhizobia and Agrobacteria of the International Committee on Systematics of Prokaryotes review recent developments in rhizobial and agrobacterial taxonomy and propose updated minimal standards for the description of new species (and genera) in these groups. The essential requirements (minimal standards) for description of a new species are (1) a genome sequence of at least the proposed type strain and (2) evidence for differentiation from other species based on genome sequence comparisons. It is also recommended that (3) genetic variation within the species is documented with sequence data from several clearly different strains and (4) phenotypic features are described, and their variation documented with data from a relevant set of representative strains. Furthermore, it is encouraged that information is provided on (5) nodulation or pathogenicity phenotypes, as appropriate, with relevant gene sequences. These guidelines supplement the current rules of general bacterial taxonomy, which require (6) a name that conforms to the International Code of Nomenclature of Prokaryotes, (7) validation of the name by publication either directly in the \\textlessem class=""\\textgreaterInternational Journal of Systematic and Evolutionary Microbiology\\textless/em\\textgreater or in a validation list when published elsewhere, and (8) deposition of the type strain in two international culture collections in separate countries.,
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https://hal-univ-lyon1.archives-ouvertes.fr/hal-02473980
Contributor : Depot 1 Lyon 1 <>
Submitted on : Tuesday, February 11, 2020 - 10:11:03 AM
Last modification on : Wednesday, February 24, 2021 - 3:29:13 AM
Contributor : Depot 1 Lyon 1 <>
Submitted on : Tuesday, February 11, 2020 - 10:11:03 AM
Last modification on : Wednesday, February 24, 2021 - 3:29:13 AM
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- HAL Id : hal-02473980, version 1
- DOI : 10.1099/ijsem.0.003426
- PRODINRA : 486565
- PUBMED : 31140963
- WOS : 000473325500003
Collections
UNIV-LYON1 | INRA | BIOENVIS | CNRS | UDL | INRAE | ECOMIC | AGROPOLIS | UNIV-MONTPELLIER | HSM | B3ESTE | INSU | CIRAD | MONTPELLIER-SUPAGRO | BA | INRAEOCCITANIEMONTPELLIER
Citation
Philippe M. Lajudie, Mitchell Andrews, Julie Ardley, Bertrand Eardly, Estelle Jumas-Bilak, et al.. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2019, 69 (7), pp.1852-1863. ⟨10.1099/ijsem.0.003426⟩. ⟨hal-02473980⟩
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