C. Heisenberg and Y. Bellaïche, Forces in Tissue Morphogenesis and Patterning, Cell, vol.153, issue.5, pp.948-962, 2013.

J. A. Zallen and R. A. Zallen, Cell-pattern disordering during convergent extension inDrosophila, Journal of Physics: Condensed Matter, vol.16, issue.44, pp.S5073-S5080, 2004.

A. Classen, K. I. Anderson, E. Marois, and S. Eaton, Hexagonal Packing of Drosophila Wing Epithelial Cells by the Planar Cell Polarity Pathway, Developmental Cell, vol.9, issue.6, pp.805-817, 2005.

T. Hayashi and R. W. Carthew, Surface mechanics mediate pattern formation in the developing retina, Nature, vol.431, issue.7009, pp.647-652, 2004.

J. Kafer, T. Hayashi, A. F. Maree, R. W. Carthew, and F. Graner, Cell adhesion and cortex contractility determine cell patterning in the Drosophilaretina, Proceedings of the National Academy of Sciences, vol.104, issue.47, pp.18549-18554, 2007.

S. Hilgenfeldt, S. Erisken, and R. W. Carthew, Physical modeling of cell geometric order in an epithelial tissue, Proceedings of the National Academy of Sciences, vol.105, issue.3, pp.907-911, 2008.

R. Farhadifar, J. Röper, B. Aigouy, S. Eaton, and F. Jülicher, The Influence of Cell Mechanics, Cell-Cell Interactions, and Proliferation on Epithelial Packing, Current Biology, vol.17, issue.24, pp.2095-2104, 2007.

M. Rauzi, P. Verant, T. Lecuit, and P. Lenne, Nature and anisotropy of cortical forces orienting Drosophila tissue morphogenesis, Nature Cell Biology, vol.10, issue.12, pp.1401-1410, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00428938

G. B. Blanchard, A. J. Kabla, N. L. Schultz, L. C. Butler, B. Sanson et al., Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation, Nature Methods, vol.6, issue.6, pp.458-464, 2009.

B. Guirao, S. U. Rigaud, F. Bosveld, A. Bailles, J. López-gay et al., Unified quantitative characterization of epithelial tissue development, eLife, vol.4, p.8519, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02626582

R. Etournay, M. Merkel, M. Popovi?, H. Brandl, N. A. Dye et al., TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics, eLife, vol.5, p.14334, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01545827

E. Faure, T. Savy, B. Rizzi, C. Melani, O. Sta?ová et al., A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage, Nature Communications, vol.7, issue.1, p.8674, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02086959

K. Sherrard, F. Robin, P. Lemaire, and E. Munro, Sequential Activation of Apical and Basolateral Contractility Drives Ascidian Endoderm Invagination, Current Biology, vol.20, issue.17, pp.1499-1510, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00566790

M. Diaz-de-la-loza, R. P. Ray, P. S. Ganguly, S. Alt, J. R. Davis et al., Apical and Basal Matrix Remodeling Control Epithelial Morphogenesis, Developmental Cell, vol.46, issue.1, pp.23-39.e5, 2018.

D. Heller, A. Hoppe, S. Restrepo, L. Gatti, A. L. Tournier et al., EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics, Developmental Cell, vol.36, issue.1, pp.103-116, 2016.

S. Ishihara, P. Marcq, and K. Sugimura, From cells to tissue: A continuum model of epithelial mechanics, Physical Review E, vol.96, issue.2, p.22418, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01580627

E. Latorre, S. Kale, L. Casares, M. Gómez-gonzález, M. Uroz et al., Active superelasticity in three-dimensional epithelia of controlled shape, Nature, vol.563, issue.7730, pp.203-208, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02348620

B. Campo, M. Ladoux, X. Arroyo, and . Trepat, Nature, vol.563, p.203, 2018.

F. Graner, B. Dollet, C. Raufaste, and P. Marmottant, Discrete rearranging disordered patterns, part I: Robust statistical tools in two or three dimensions, The European Physical Journal E, vol.25, issue.4, pp.349-369, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00160733

R. O. Duda and P. E. Hart, Use of the Hough transformation to detect lines and curves in pictures, Communications of the ACM, vol.15, issue.1, pp.11-15, 1972.

S. J. Streichan, M. F. Lefebvre, N. Noll, E. F. Wieschaus, and B. I. Shraiman, Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors, eLife, vol.7, p.27454, 2018.

R. Lehoucq, J. Weiss, B. Dubrulle, A. Amon, A. Le-bouil et al., Analysis of image vs. position, scale and direction reveals pattern texture anisotropy, Frontiers in Physics, vol.2, p.84, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01117752

A. Boudaoud, A. Burian, D. Borowska-wykr?t, M. Uyttewaal, R. Wrzalik et al., FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images, Nature Protocols, vol.9, issue.2, pp.457-463, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01204146

F. Bosveld, I. Bonnet, B. Guirao, S. Tlili, Z. Wang et al., Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway, Science, vol.336, issue.6082, pp.724-727, 2012.
URL : https://hal.archives-ouvertes.fr/hal-02463702

A. Bruns, Fourier-, Hilbert- and wavelet-based signal analysis: are they really different approaches?, Journal of Neuroscience Methods, vol.137, issue.2, pp.321-332, 2004.

A. Bruns, Erratum to ?Fourier-, Hilbert- and wavelet-based signal analysis: are they really different approaches??, Journal of Neuroscience Methods, vol.143, issue.2, p.237, 2005.

L. Moisan, Periodic Plus Smooth Image Decomposition, Journal of Mathematical Imaging and Vision, vol.39, issue.2, pp.161-179, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00388020

K. Bagi, Analysis of microstructural strain tensors for granular assemblies, International Journal of Solids and Structures, vol.43, issue.10, pp.3166-3184, 2006.

K. Farahani and R. Naghdabadi, Conjugate stresses of the Seth?Hill strain tensors, International Journal of Solids and Structures, vol.37, issue.38, pp.5247-5255, 2000.

H. Hencky, The Law of Elasticity for Isotropic and Quasi?Isotropic Substances by Finite Deformations, Journal of Rheology, vol.2, issue.2, pp.169-176, 1931.

M. Durande, S. Tlili, T. Homan, B. Guirao, F. Graner et al., Fast determination of coarse-grained cell anisotropy and size in epithelial tissue images using Fourier transform, Physical Review E, vol.99, issue.6, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02367869

S. Hilbert, . Fft-zero, and . Padding, , 2013.

E. Rozbicki, M. Chuai, A. I. Karjalainen, F. Song, H. M. Sang et al., Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation, Nature Cell Biology, vol.17, issue.4, pp.397-408, 2015.

S. Tlili, M. Durande, C. Gay, B. Ladoux, F. Graner et al., Migrating Epithelial Monolayer Flows Like a Maxwell Viscoelastic Liquid, Physical Review Letters, vol.125, issue.8, 2020.
URL : https://hal.archives-ouvertes.fr/hal-02928890

R. Tanner and E. Tanner, Heinrich Hencky: a rheological pioneer, Rheologica Acta, vol.42, issue.1-2, pp.93-101, 2003.